gatk3的最后一个经典版本3.8

Ami Levy-Moonshine 673ed0aaa6 remove public-protected dependency by commeting out some code that should be re-included after all the walkers will be in portected (added some todos)		2013-01-07 17:07:23 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Bug fix in the HC's allele mapping for multi-allelic events. Using the allele alone as a key isn't sufficient because alleles change when the reference allele changes during VariantContextUtils.simpleMerge for multi-allelic events.	2013-01-07 11:05:44 -05:00
public	remove public-protected dependency by commeting out some code that should be re-included after all the walkers will be in portected (added some todos)	2013-01-07 17:07:23 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Re-enabling contracts in tests in build.xml	2013-01-02 11:29:25 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00