gatk3的最后一个经典版本3.8

depristo 672bee295c now plots tranches separately from optimizer ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4000 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-10 12:02:52 +00:00
R	now plots tranches separately from optimizer	2010-08-10 12:02:52 +00:00
archive	Archiving	2010-07-27 02:47:18 +00:00
c	Reduce file handle usage.	2010-01-05 18:03:01 +00:00
doc	moved to wiki	2009-07-22 16:35:23 +00:00
java	adding tests for BTI in the ROD validation tests	2010-08-10 06:05:40 +00:00
matlab	Another matlab script -- this time for making power and coverage plots over a specific gene region. Lots of fun file reading, string manipulation, and exploration of the set() function	2009-11-30 20:02:25 +00:00
packages	Updated resources package descriptor with dbsnp 129 for b37.	2010-08-03 02:42:48 +00:00
perl	1. Updated tests and added integration test for liftover code.	2010-07-12 17:58:18 +00:00
python	now support -o output option, useful for pipelines	2010-08-06 14:57:04 +00:00
ruby	Adding the ruby directory, and a simple script to restart Bamboo	2009-12-03 22:48:48 +00:00
scala	full path to Rscript	2010-08-10 12:02:38 +00:00
settings	Changed logging level to default at INFO instead of WARN.	2010-08-09 16:42:48 +00:00
shell	Useful script to see the status of gsa computing resources. Crontab'd and will be arriving as email at 8 am	2010-08-07 12:36:28 +00:00
testdata	and add changes to the vcf used in testing	2010-06-25 02:56:02 +00:00
LICENSE	Adding a license to the root directory in case BOSC checks for one. Has the	2010-04-20 16:04:29 +00:00
build.xml	Fixed a problem when mixing queue with other targets, such as 'ant clean oneoffs queue' and the STING_BUILD_TYPE environment is set.	2010-08-09 17:59:51 +00:00
ivy.xml	Changed logging level to default at INFO instead of WARN.	2010-08-09 16:42:48 +00:00