gatk-3.8

History

Mauricio Carneiro ed91461c49 Data Processing Pipeline Test * Added standard pipeline test for the DPP * Added a full BWA pipeline test for the DPP * Included the extra files for the reference needed by BWA (to be used by DPP and PPP tests)		2011-12-12 00:24:51 -05:00
..
vcf	…
HiSeq.10000.bgzip.vcf.gz	Adding bgzip vcf file for unit tests	2011-09-21 15:39:45 -04:00
HiSeq.10000.vcf	…
HiSeq.10000.vcf.gz	GZIP VCF for testing	2011-08-19 09:05:39 -04:00
TabularDataTest.dat	…
TabularDataTest2.dat	…
ValidatingPileupTargets.list	…
ceutrio.ped	Oops, forgot the PED test file	2011-10-05 21:09:08 -07:00
defaultGATKConfig.cfg	…
diffTestMaster.vcf	…
diffTestTest.vcf	…
exampleBAM.bam	PPP pipeline test	2011-12-11 17:32:21 -05:00
exampleBAM.bam.bai	PPP pipeline test	2011-12-11 17:32:21 -05:00
exampleBAM.simple.bai	Testdata for diffObjects.	2011-07-18 10:47:03 -04:00
exampleBAM.simple.bam	Testdata for diffObjects.	2011-07-18 10:47:03 -04:00
exampleDBSNP.vcf	PPP pipeline test	2011-12-11 17:32:21 -05:00
exampleFASTA.dict	…
exampleFASTA.fasta	…
exampleFASTA.fasta.amb	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.ann	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.bwt	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.fai	…
exampleFASTA.fasta.pac	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.rbwt	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.rpac	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.rsa	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.sa	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00
exampleNORG.bam	…
exampleNORG.bam.bai	…
gFFTest.gff	…
genotypes_chr1_ASW_phase3.3_first500.hapmap	…
logisticParamsTest.list	…
overlapTest.bed	Testdata for IntervalStratification	2011-11-10 11:08:34 -05:00
recalConfig_1KG.cfg	…
sampleBedFile.bed	…
small.dbsnp.rod	…
tranches.4.txt	…
tranches.6.txt	…
tranches.raw.dat	…
withSymbolic.b37.vcf	Testdata for IntervalStratification	2011-11-10 11:08:34 -05:00