Christopher Hartl 67298f8a11 AFCR made public (for use in VSS) ... Minor changes to ValidationSiteSelector logic (SampleSelectors determine whether a site is valid for output, no actual subset context need be operated on beyond that determination). Implementation of GL-based site selection. Minor changes to EJG.		2011-12-19 23:14:26 -05:00
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R	Protect ourselves when iteration is present but there's only a single iteration in queueJobReport.R	2011-12-19 10:08:38 -05:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	…
doc	…
java	AFCR made public (for use in VSS)	2011-12-19 23:14:26 -05:00
packages	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Removing cruft that snuck in last commit.	2011-12-16 23:00:16 -05:00
testdata	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00