Ryan Poplin 8a84456626 Following Eric's awesome update to change the VQSR recal file into a VCF file, the ApplyRecalibration step is now scatter/gather-able and tree reducible.		2012-04-18 11:24:04 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Following Eric's awesome update to change the VQSR recal file into a VCF file, the ApplyRecalibration step is now scatter/gather-able and tree reducible.	2012-04-18 11:24:04 -04:00
test	Final tweaks. Added an integration test to cover the case of SNPs and indels that start at the same position.	2012-04-17 23:54:10 -04:00