corin e7569cfe6f Updated dbsnp version usage. Calling with 132, but still using 129 for eval to maintain consistant known/novel eval ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4895 348d0f76-0448-11de-a6fe-93d51630548a		2010-12-22 17:37:27 +00:00
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qscript	Updated dbsnp version usage. Calling with 132, but still using 129 for eval to maintain consistant known/novel eval	2010-12-22 17:37:27 +00:00
src	PrivatePermutations generalized to compute transition counts and average probabilities (and thus was renamed). Changes in some pipelines to reflect the change. Bugfix in the batch merging pipeline (it would halt because the allele VCF for genotyping batches could become off-spec).	2010-12-22 15:16:15 +00:00
test/org/broadinstitute/sting/queue	Updated pipeline test to match Eric's changes in r4846.	2010-12-17 19:52:09 +00:00