Mauricio Carneiro 66a8b36cf5 Fixed most indexing bugs ... * added bases and quals to consensus * fixed consensus read cigar generation.		2011-08-30 02:43:41 -04:00
..
R	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Fixed most indexing bugs	2011-08-30 02:43:41 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Creating sample-bam list instead of joining	2011-08-22 18:03:39 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00