depristo 1993472b38 Just like VariantFiltration but lets you match info fields out of the VCF instead of annotating them. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2736 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-29 15:38:03 +00:00
..
duplicates	forgot to update md5s	2009-12-29 20:31:29 +00:00
poolseq	Added - new tests (Hapmap was re-added)	2009-12-14 21:57:20 +00:00
varianteval	-B 1kg_ceu,VFC,CEU.vcf -B 1kg_yri,VCF,YRI.vcf system supported to allow 1KG % (like dbSNP%)	2010-01-19 21:33:13 +00:00
variantstovcf	Renamed SequenomToVCF as PlinkToVCF. Wiki will be changed accordingly.	2010-01-21 17:35:20 +00:00
vcftools	Just like VariantFiltration but lets you match info fields out of the VCF instead of annotating them.	2010-01-29 15:38:03 +00:00
ClipReadsWalkersIntegrationTest.java	moved hard-coded file paths to the oneKGLocation, validationDataLocation, and seqLocation variables setup in the BaseTest.	2009-12-29 07:40:48 +00:00
ConcordanceTruthTableTest.java	First revision of command-line argument support for GenotypeWriter. Also, fixed the damn build.	2009-12-20 19:19:23 +00:00
HapmapPoolAllelicInfoIntegrationTest.java	Hurrr -- this uses power as part of its output. Changes to the power calculation broke the md5s RIGHT AFTER I HAD FIXED THEM arghflrg.	2009-12-14 22:42:50 +00:00