ebanks dbd3d4473e Making a copy here before changing the live copy ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2709 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-27 20:44:15 +00:00
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R	Initial checkin of AnalyzeCovariates.java which replaces analyzeRecalQuals_1KG.py and is updated to use the new Covariates system. It creates similar plots of residual error for each covariate that was used in the calculation. There is also an option to filter out base qualities below a given threshold.	2009-12-02 16:47:35 +00:00
java/src/org/broadinstitute/sting	Making a copy here before changing the live copy	2010-01-27 20:44:15 +00:00
python	Initial checkin of AnalyzeCovariates.java which replaces analyzeRecalQuals_1KG.py and is updated to use the new Covariates system. It creates similar plots of residual error for each covariate that was used in the calculation. There is also an option to filter out base qualities below a given threshold.	2009-12-02 16:47:35 +00:00