gatk3的最后一个经典版本3.8

Guillermo del Angel 66772d0ebf Next iteration in the pool caller: more bug fixes, start of big refactoring to clean up interfaces, moved up a lot of attributes that really belonged to a site up from the Pool class, added by default option to filter out a call if there's no reference depth (instead of just skipping the call which makes it hard to figure out what happened afterwards).		2012-01-25 15:41:08 -05:00
public	another small bug with the file extension.	2012-01-24 16:14:35 -05:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Merged bug fix from Stable into Unstable	2012-01-24 15:19:29 -05:00
ivy.xml	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00