71 lines
2.6 KiB
Java
71 lines
2.6 KiB
Java
/*
|
|
* Copyright (c) 2010, The Broad Institute
|
|
*
|
|
* Permission is hereby granted, free of charge, to any person
|
|
* obtaining a copy of this software and associated documentation
|
|
* files (the "Software"), to deal in the Software without
|
|
* restriction, including without limitation the rights to use,
|
|
* copy, modify, merge, publish, distribute, sublicense, and/or sell
|
|
* copies of the Software, and to permit persons to whom the
|
|
* Software is furnished to do so, subject to the following
|
|
* conditions:
|
|
*
|
|
* The above copyright notice and this permission notice shall be
|
|
* included in all copies or substantial portions of the Software.
|
|
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
|
|
* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
|
|
* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
|
|
* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
|
|
* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
|
|
* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
|
|
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
|
|
* OTHER DEALINGS IN THE SOFTWARE.
|
|
*/
|
|
|
|
package org.broadinstitute.sting.gatk;
|
|
|
|
import org.broadinstitute.sting.commandline.Hidden;
|
|
import org.broadinstitute.sting.gatk.walkers.Walker;
|
|
import org.broadinstitute.sting.gatk.walkers.qc.CountLoci;
|
|
import org.broadinstitute.sting.utils.exceptions.DynamicClassResolutionException;
|
|
import org.broadinstitute.sting.utils.exceptions.UserException;
|
|
import org.testng.Assert;
|
|
import org.testng.annotations.BeforeClass;
|
|
import org.testng.annotations.Test;
|
|
|
|
/**
|
|
* Tests basic functionality of the walker manager.
|
|
*/
|
|
public class WalkerManagerUnitTest {
|
|
private static WalkerManager walkerManager;
|
|
|
|
@BeforeClass
|
|
public void setUp() {
|
|
walkerManager = new WalkerManager();
|
|
}
|
|
|
|
@Test
|
|
public void testPresentWalker() {
|
|
Walker countLociWalker = walkerManager.createByName("CountLoci");
|
|
Assert.assertEquals(CountLoci.class,countLociWalker.getClass());
|
|
}
|
|
|
|
@Test(expectedExceptions=UserException.class)
|
|
public void testAbsentWalker() {
|
|
walkerManager.createByName("Missing");
|
|
}
|
|
|
|
@Test(expectedExceptions=DynamicClassResolutionException.class)
|
|
public void testUninstantiableWalker() {
|
|
walkerManager.createByName("UninstantiableWalker");
|
|
}
|
|
}
|
|
|
|
@Hidden
|
|
class UninstantiableWalker extends Walker<Integer,Long> {
|
|
// Private constructor will generate uninstantiable message
|
|
private UninstantiableWalker() {}
|
|
public Long reduceInit() { return 0L; }
|
|
public Long reduce(Integer value, Long accum) { return 0L; }
|
|
}
|