Ryan Poplin 89e2943dd1 The maximum kmer length is derived from the reads. ... -- This is done to take advantage of longer reads which can produce less ambiguous haplotypes -- Integration tests change for HC and BiasedDownsampling		2013-02-25 14:40:25 -05:00
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AlignmentUtilsUnitTest.java	Fixed IndelRealigner reference length bug (GSA-774)	2013-02-19 16:00:36 -05:00
ArtificialBAMBuilderUnitTest.java	Last manual license update (hopefully)	2013-01-18 16:13:07 -05:00
ArtificialPatternedSAMIteratorUnitTest.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
ArtificialSAMFileWriterUnitTest.java	PrintReads writes a header when used with -BQSR	2013-02-14 22:19:14 -05:00
ArtificialSAMQueryIteratorUnitTest.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
ArtificialSAMUtilsUnitTest.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
ArtificialSingleSampleReadStreamUnitTest.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
GATKSAMRecordUnitTest.java	PileupElement and LIBS cleanup	2013-01-11 15:17:17 -05:00
MisencodedBaseQualityUnitTest.java	Need to reset the static counter before tests are run or else we won't be deterministic.	2013-02-05 10:41:46 -05:00
ReadUtilsUnitTest.java	The maximum kmer length is derived from the reads.	2013-02-25 14:40:25 -05:00