David Roazen 8b29030467 Change default downsampling coverage target for the HaplotypeCaller to 250 ... -was previously set to 30, which seems far too aggressive given that with ActiveRegionWalkers, as with LocusWalkers, this limits the depth of any pileup returned by LIBS -250 is a more conservative default used by the UG -can adjust down/up later based on further experiments (GSA-699 will remain open) -verified with Ryan that all integration test differences are either innocent or represent an improvement GSA-699		2013-02-26 09:33:25 -05:00
..
gatk	Change default downsampling coverage target for the HaplotypeCaller to 250	2013-02-26 09:33:25 -05:00
utils	Cleanup and unit tests for QualityUtils	2013-02-16 07:31:37 -08:00
package-info.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00