gatk3的最后一个经典版本3.8

David Roazen 65d31ba4ad Fix runtime public -> protected dependencies in the test suite ... -replace unnecessary uses of the UnifiedGenotyper by public integration tests with PrintReads -move NanoSchedulerIntegrationTest to protected, since it's completely dependent on the UnifiedGenotyper		2013-02-26 21:19:12 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected/java	Fix runtime public -> protected dependencies in the test suite	2013-02-26 21:19:12 -05:00
public	Fix runtime public -> protected dependencies in the test suite	2013-02-26 21:19:12 -05:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00