mmelgar 6580211c2a First version of depth of coverage filter. Right now it takes in a maximum coverage threshold given by the user. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1175 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-06 18:22:46 +00:00
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gatk	Cleanup emergency fixes for out-of-bounds issues in reference retrieval. Fix spelling mistakes.	2009-07-06 15:41:30 +00:00
playground	First version of depth of coverage filter. Right now it takes in a maximum coverage threshold given by the user.	2009-07-06 18:22:46 +00:00
secondarybase	A single class that can be handed reads for training and basecalling. When in training mode, we accumulate no more than 10000 reads and always replace the lowest-quality reads with superior quality reads. Thus, the training set always contains 10000 of the best reads available. After training is complete, the class can be interrogated to return the SQ tag for a given RawRead object.	2009-06-30 16:03:15 +00:00
utils	Cleanup emergency fixes for out-of-bounds issues in reference retrieval. Fix spelling mistakes.	2009-07-06 15:41:30 +00:00