gatk-3.8

History

Eric Banks 64d5bf650e Pulled out some hard-coded values from the read-threading and isActive code of the HC, and made them into a single argument. In unifying the arguments it was clear that the values were inconsistent throughout the code, so now there's a single value that is intended to be more liberal in what it allows in (in an attempt to increase sensitivity). Very little code actually changes here, but just about every md5 in the HC integration tests are different (as expected). Added another integration test for the new argument. To be used by David R to test his per-branch QC framework: does this commit make the HC look better against the KB?	2014-01-19 01:15:13 -05:00
..
gatk/walkers	Pulled out some hard-coded values from the read-threading and isActive code of the HC, and made them into a single argument.	2014-01-19 01:15:13 -05:00
utils	Fix 3rd-party library dependency issues in the HC/PairHMM tests	2013-12-06 13:16:55 -05:00

Eric Banks 64d5bf650e Pulled out some hard-coded values from the read-threading and isActive code of the HC, and made them into a single argument.

In unifying the arguments it was clear that the values were inconsistent throughout the code, so now there's a
single value that is intended to be more liberal in what it allows in (in an attempt to increase sensitivity).

Very little code actually changes here, but just about every md5 in the HC integration tests are different (as
expected).  Added another integration test for the new argument.

To be used by David R to test his per-branch QC framework: does this commit make the HC look better against the KB?

2014-01-19 01:15:13 -05:00

gatk/walkers

Pulled out some hard-coded values from the read-threading and isActive code of the HC, and made them into a single argument.

2014-01-19 01:15:13 -05:00

utils

Fix 3rd-party library dependency issues in the HC/PairHMM tests

2013-12-06 13:16:55 -05:00