gatk3的最后一个经典版本3.8

Mark DePristo 64d4238e2f 99% working version of BCF2 encoder / decoder ... -- fixed final bugs with PL encoding / decoding -- Ready for testing by other members of the group -- Current performance numbers aren't so great, but they will improve in the next phase of BCF2 optimizations -- Fixed a nasty bug in the filter field -- Not that some (many?) GATK tools won't work with BCF because they internally assume values are Strings not their true types Read 1500 genotypes file in VCF -> VCF : 11 seconds Read 1500 genotypes file in VCF -> BCF : 9.5 seconds VariantEval 1500 genotypes file in VCF : 3 seconds VariantEval 1500 genotypes file in BCF : 3 seconds		2012-05-24 10:57:05 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java/src/org/broadinstitute/sting	build system overhaul	2012-05-17 15:16:29 -04:00
public	99% working version of BCF2 encoder / decoder	2012-05-24 10:57:05 -04:00
settings	Testing of BCF codec	2012-05-24 10:57:01 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Individual VariantContextWriters are now package protected	2012-05-24 10:57:00 -04:00
ivy.xml	Not Nexus. Need new name. Navel?	2012-05-24 10:11:58 -04:00