gatk3的最后一个经典版本3.8

aaron 64b7b3f83b fix for a recent change to the indexing code where we ignore the results of locking the file (this is bad), and as a result don't write the index; this should fix the build. ... Off to Yosemite in 4 hours, enjoy the week gsa folks! git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4410 348d0f76-0448-11de-a6fe-93d51630548a		2010-10-02 04:35:11 +00:00
R	Venn diagrams are now oriented properly when a < b. Added a slide with callset summary table. All plots now show the present-in-a, filtered-in-b metrics. Added title page with project name, author, and timestamp.	2010-10-01 22:17:21 +00:00
archive	Cleaning up playground utils and tests	2010-08-27 01:25:47 +00:00
c	Reduce file handle usage.	2010-01-05 18:03:01 +00:00
doc	removing the custom reflections library from the libs, and adding a release version. Hopefully this will fix the problem Menachem has been seeing with random JVM crashes. Also	2010-08-19 00:42:37 +00:00
java	fix for a recent change to the indexing code where we ignore the results of locking the file (this is bad), and as a result don't write the index; this should fix the build.	2010-10-02 04:35:11 +00:00
matlab	Another matlab script -- this time for making power and coverage plots over a specific gene region. Lots of fun file reading, string manipulation, and exploration of the set() function	2009-11-30 20:02:25 +00:00
packages	Accidental fail to commit missing file.	2010-10-01 20:26:51 +00:00
perl	Added 'Cron' to subject for easier message filtering	2010-09-28 21:03:50 +00:00
python	clean-up the docs a little	2010-09-29 05:02:41 +00:00
ruby	accidentally commited an old tool	2010-08-25 15:42:02 +00:00
scala	Sigh. Fix the source of even more UserErrors in the phone home directory: make sure to gunzip the beagle files before passing them into the conversion walker...	2010-10-01 03:28:36 +00:00
settings	The battle is over. Picard is revved.	2010-09-03 05:28:01 +00:00
shell	Updated from SnakeYAML 1.6 to 1.7.	2010-09-22 19:47:49 +00:00
testdata	and add changes to the vcf used in testing	2010-06-25 02:56:02 +00:00
LICENSE	Adding a license to the root directory in case BOSC checks for one. Has the	2010-04-20 16:04:29 +00:00
build.xml	Make package dir configurable.	2010-10-01 22:25:17 +00:00
ivy.xml	Updated from SnakeYAML 1.6 to 1.7.	2010-09-22 19:47:49 +00:00