aaron 647a367680 Made the size zero interval file checker emit a warnUser if we're not in unsafe mode. ... Also changed the default logger level from error to warn. Does anyone object? It makes sense for users to always get their warn user statements in the default logging level. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1451 348d0f76-0448-11de-a6fe-93d51630548a		2009-08-21 14:40:57 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Made the size zero interval file checker emit a warnUser if we're not in unsafe mode.	2009-08-21 14:40:57 +00:00
test/org/broadinstitute/sting	we want the RMS of the reads qualities not the RMS of the RMS of the read qualities.	2009-08-20 21:56:29 +00:00