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gatk-3.8/protected/java/test/org/broadinstitute/sting/gatk/walkers
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Chris Hartl a3b98daf1a Merge branch 'master' of gsa2:/humgen/gsa-scr1/chartl/dev/unstable 2013-01-23 14:49:34 -05:00
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annotator Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
beagle Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
bqsr Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
compression/reducereads Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
diagnostics Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
diffengine Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
fasta Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
filters Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
genotyper Optimized the Allele Biased Downsampling: now it doesn't re-sort the pileup but just removes reads from the original one. 2013-01-18 11:17:31 -05:00
haplotypecaller Updating md5s for CountReadsInActiveRegions and HaplotypeCaller to reflect new activity profile mechanics 2013-01-23 13:46:01 -05:00
indels Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
phasing Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
validation Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
varianteval Since GenotypeConcordance is now a standalone walker, remove the old GenotypeConcordance evaluation module and the associated integration tests. 2013-01-23 14:47:23 -05:00
variantrecalibration Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
variantutils Merge branch 'master' of gsa2:/humgen/gsa-scr1/chartl/dev/unstable 2013-01-22 15:31:30 -05:00