Ron Levine 64375f6341 Messages that were going to stdout now going to stderr ... Make PairHMM outputs go to stderr instead of stdout Change output from stdout to stderr in close() Updated lib with output going to stderr		2014-12-23 11:03:29 -05:00
..
VectorPairHMM	Messages that were going to stdout now going to stderr	2014-12-23 11:03:29 -05:00
c	After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.	2014-05-19 17:36:41 -04:00
chainFiles	The contig is named MT not M in b36. Delivers PT68890442.	2014-04-08 10:03:47 -04:00
doc	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
external-example	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00
gatk-engine	Catch RuntimeException and add the bad file name to the newly thown exception	2014-11-05 09:14:33 -05:00
gatk-queue	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00
gatk-queue-extensions-generator	Split all imports of tools|engine from utils, and all tools from engine.	2014-10-24 20:59:46 +08:00
gatk-queue-extensions-public	Disabling tests for Lsf706 specific functionality.	2014-11-04 01:31:18 +08:00
gatk-root	Merge pull request #768 from broadinstitute/pd_bcf_failures	2014-10-31 15:30:56 -04:00
gatk-tools-public	Fix mmultiallelic info field annotation for VariantAnnotator	2014-12-17 22:21:00 -05:00
gatk-utils	Messages that were going to stdout now going to stderr	2014-12-23 11:03:29 -05:00
gsalib	Updated gsalib version to 2.1 for resubmitting with updated license to CRAN	2014-12-09 17:07:48 -05:00
java/config	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
package-tests	Split all imports of tools|engine from utils, and all tools from engine.	2014-10-24 20:59:46 +08:00
perl	Fixing the liftover script to not require strict VCF header validation.	2013-11-07 09:02:17 -05:00
repo	Revved Picard/htsjdk	2014-10-30 21:16:25 -04:00
src/main	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
pom.xml	Update pom versions to mark the start of GATK 3.4 development	2014-10-23 22:31:44 -04:00