gatk3的最后一个经典版本3.8

Eric Banks 6431078eff The previous commit had a minor bug fix that required updating an md5: previously, an extra cycle at the end of the read was being 'padded' out so cycle 72 wasn't making it into the table. Ryan, probably not worth rerunning your analysis for this.		2012-06-15 02:45:44 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java/src/org/broadinstitute/sting	build system overhaul	2012-05-17 15:16:29 -04:00
public	No more extraneous array creation in BQSR covariate classes; now covariates push their data directly to the ReadCovariates class as it's calculated (no more going through CovariateValues.java)	2012-06-15 02:32:00 -04:00
settings	Testing of BCF codec	2012-05-24 10:57:01 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	ant fasttest: for when you just can't wait	2012-06-01 15:17:18 -04:00
ivy.xml	Final updates to integration tests for BCF2	2012-05-24 10:58:59 -04:00