gatk3的最后一个经典版本3.8
 
 
 
 
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Mark DePristo 641c6a361e Fix nasty memory leak in new data thread x cpu thread parallelism
-- Basically you cannot safely use instance specific ThreadLocal variables, as these cannot be safely cleaned up.  The old implementation kept pointers to old writers, with huge tribble block indexes, and eventually we crashed out of integration tests
-- See http://weblogs.java.net/blog/jjviana/archive/2010/06/10/threadlocal-thread-pool-bad-idea-or-dealing-apparent-glassfish-memor for more information
-- New implementation uses a borrow/return schedule with a list of N TraversalEngines managed by the MicroScheduler directly.
2012-09-10 20:14:14 -04:00
licensing Revert unintentional license change 2012-08-09 17:10:47 -04:00
protected/java Bug fix in HC GenotypingEngine to ensure that all the merged complex events get properly added to the priority list used by VariantContextUtils when combining multiallelic events. 2012-09-09 13:47:54 -04:00
public Fix nasty memory leak in new data thread x cpu thread parallelism 2012-09-10 20:14:14 -04:00
settings Updating cofoja to the latest version 2012-08-09 16:36:18 -04:00
.gitignore a few more useful git ignores 2012-09-01 11:08:36 -04:00
build.xml More memory for gatkdocs and extracthelp targets 2012-09-05 15:45:22 -04:00
ivy.xml Updating cofoja to the latest version 2012-08-09 16:36:18 -04:00