Eric Banks 6ddf2170b6 More efficient implementation of the sum of the allele frequency posteriors matrix using a pre-allocated cache as discussed in group meeting last week. Now, when the cache is filled, we safely collapse down to a single value in real space and put the un-re-centered log10 value back into the front of the cache. Thanks to all for the help and advice.		2012-04-09 11:46:16 -04:00
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R	Further cleanup of R	2012-03-22 21:24:37 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	More efficient implementation of the sum of the allele frequency posteriors matrix using a pre-allocated cache as discussed in group meeting last week. Now, when the cache is filled, we safely collapse down to a single value in real space and put the un-re-centered log10 value back into the front of the cache. Thanks to all for the help and advice.	2012-04-09 11:46:16 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Added more primitives to GATK Report Column Type	2012-03-28 09:07:54 -04:00
testdata	continuing the BQSR triage...	2012-04-05 14:34:15 -04:00