gatk3的最后一个经典版本3.8

Mark DePristo 63a9ae817a Ensure thread-safety of CachingIndexedFastaSequenceFile ... -- Cosmetic cleanup of ReadReferenceView -- TraverseReadsNano provides the reference context, since it's thread-safe -- Cleanup CachingIndexedFastaSequenceFile. Add docs, remove unnecessary setters -- Expand CachingIndexedFastaSequenceFileUnitTest to test explicitly multi-threaded safety.		2012-08-27 12:11:54 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	HaplotypeCaller forbids BAQ	2012-08-24 13:25:05 -04:00
public	Ensure thread-safety of CachingIndexedFastaSequenceFile	2012-08-27 12:11:54 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Convert external.build.dir and external.dist.dir back to paths	2012-08-15 23:04:10 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00