gatk3的最后一个经典版本3.8

Mark DePristo 6382d5bdc9 Final cleanup and unit testing for GATKRunReport ... -- Bringing code up to document, style, and code coverage specs -- Move GATKRunReportUnitTest to private -- Fully expand GATKRunReportUnitTests to coverage writing and reading GATKRunReport to local disk, to standard out, to AWS. -- Move documentation URL from GATKRunReport to UserException -- Delete a few unused files from s3GATKReport -- Added capabilities to GATKRunReport to make testing easier -- Added capabilities to deserialize GATKRunReports from an InputStream		2013-02-02 15:06:56 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	- Added more comprehensive tests for consensus creation to RR. Still need to add tests for I/D ops.	2013-02-01 15:37:19 -05:00
public	Final cleanup and unit testing for GATKRunReport	2013-02-02 15:06:56 -05:00
settings	Rev picard, sam-jdk, and tribble	2013-02-01 13:51:30 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Move AWS keys to a resources subdirectory within the phonehome package	2013-01-31 11:56:34 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00