gatk3的最后一个经典版本3.8

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Laura Gauthier 633e729608 Reverted setupNA12878kb script to use old-style path names Import files are now derived from /humgen/gsa-hpprojects/NA12878Collection/knowledgeBase/runme.allLoci.csh, which subsets samples to NA12878 but maintains all loci		2016-01-28 08:29:36 -05:00
licensing	Updated licenses for 2015	2015-08-06 15:23:11 -04:00
protected	Add new -AS mode to run VQSR (both VariantRecalibrator and ApplyRecalibration) in an allele-specific manner	2016-01-22 13:18:21 -05:00
public	Add new -AS mode to run VQSR (both VariantRecalibrator and ApplyRecalibration) in an allele-specific manner	2016-01-22 13:18:21 -05:00
settings/helpTemplates	Numerous doc fixes; mostly formatting and clarifications	2015-05-03 00:28:46 +02:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.6 development	2015-11-25 01:52:51 -05:00

The Genome Analysis Toolkit