Menachem Fromer fa3ff53508 Filters should only be applied to the new VC if the old VC had filters applied		2011-07-13 11:58:16 -04:00
..
analyzecovariates	Adding more comments to main VQSR walker. Fixing copyright lines. Bug fix for default paths to now point to public/R/ instead of R/ Bug fix in VQSR for the path to the R scripts not ending in a slash.	2011-07-06 10:01:14 -04:00
commandline	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
gatk	Filters should only be applied to the new VC if the old VC had filters applied	2011-07-13 11:58:16 -04:00
jna	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
pipeline	Cleanup of the utils.broad package.	2011-07-01 20:47:03 -04:00
queue	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
utils	Fix for the case of requesting genotype for a sample that doesn't exist in a VariantContext	2011-07-12 13:55:21 -04:00