aaron 6313c465fb we want the RMS of the reads qualities not the RMS of the RMS of the read qualities. ... Also the VCF version tag seems to be standardized as VCR. Updated the VCF code. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1447 348d0f76-0448-11de-a6fe-93d51630548a		2009-08-20 21:56:29 +00:00
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gatk	we want the RMS of the reads qualities not the RMS of the RMS of the read qualities.	2009-08-20 21:56:29 +00:00
playground	resuse fasta file reader	2009-08-20 16:01:58 +00:00
secondarybase	Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application.	2009-07-08 18:49:08 +00:00
utils	we want the RMS of the reads qualities not the RMS of the RMS of the read qualities.	2009-08-20 21:56:29 +00:00