ebanks 630066cc0a 1. Merge LocusWindows whose reads overlap. ... 2. Fix bug (we weren't clearing the "to emit" list) git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@670 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-12 17:33:23 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	1. Merge LocusWindows whose reads overlap.	2009-05-12 17:33:23 +00:00
test/org/broadinstitute/sting	intervals_file + genome_loc => intervals.	2009-05-12 01:04:18 +00:00