hanna 62e7e46754 Miscellaneous cleanup. Better display of help output. Better exception subtyping. More thought-out access routines. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@608 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-06 21:16:01 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Miscellaneous cleanup. Better display of help output. Better exception subtyping. More thought-out access routines.	2009-05-06 21:16:01 +00:00
test/org/broadinstitute/sting	Cleanup: add support for non-public fields. Track matches as state of parsing engine as well as definitions.	2009-05-06 19:38:05 +00:00