aaron 62c484b57a Fixes for GSA-201, where enumerated types in command line arguments had to be defined as all uppercase for the system to work. ... Also a little playground walker that changes the sort order flag of a BAM file. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1805 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-09 18:11:32 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Fixes for GSA-201, where enumerated types in command line arguments had to be defined as all uppercase for the system to work.	2009-10-09 18:11:32 +00:00
test/org/broadinstitute/sting	Fix issue Eric was seeing with java.lang.Error in unmap0.	2009-10-09 17:46:56 +00:00