kiran 62ac7366ed A quick hack to ensure that the sequence, qualities, and secondary qualities are in accordance with the strand flag. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@331 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-08 15:57:28 +00:00
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src/org/broadinstitute/sting	A quick hack to ensure that the sequence, qualities, and secondary qualities are in accordance with the strand flag.	2009-04-08 15:57:28 +00:00
test/org/broadinstitute/sting/utils/cmdLine	Fix argument parser test case.	2009-03-27 16:05:18 +00:00