Mauricio Carneiro 62a2e335bc Changing HardClipper contract to allow UNMAPPED reads ... shifted the contract to functions that operate on reference based coordinates. The clipper should do the right thing with unmapped reads, but it needs more testing (Ryan is using it at the moment and says it works). Will write some unit tests.		2011-12-15 11:08:19 -05:00
..
config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Changing HardClipper contract to allow UNMAPPED reads	2011-12-15 11:08:19 -05:00
test	Added unit test to catch Ryan's exception	2011-12-14 16:58:14 -05:00