Jacob Silterra 62625b4bc6 Add option to not require soft-clips on both ends ... Previous version of OverclippedReadFilter would only filter a read if both ends of a read had a soft-clipped block. This adds a boolean option to relax that requirement, and only require 1 soft-clipped block, while also filtering on read length - softclipped length		2015-08-12 10:38:27 -04:00
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src	Add option to not require soft-clips on both ends	2015-08-12 10:38:27 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.5 development	2015-05-15 00:44:54 -04:00