gatk3的最后一个经典版本3.8

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Jacob Silterra 62625b4bc6 Add option to not require soft-clips on both ends Previous version of OverclippedReadFilter would only filter a read if both ends of a read had a soft-clipped block. This adds a boolean option to relax that requirement, and only require 1 soft-clipped block, while also filtering on read length - softclipped length		2015-08-12 10:38:27 -04:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	Faster implementation of the active state profile value calculation when running HC with a single sample.	2015-07-30 10:56:05 -04:00
public	Add option to not require soft-clips on both ends	2015-08-12 10:38:27 -04:00
settings/helpTemplates	Numerous doc fixes; mostly formatting and clarifications	2015-05-03 00:28:46 +02:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.5 development	2015-05-15 00:44:54 -04:00

The Genome Analysis Toolkit