Eric Banks 6230315ff2 Along with my half-written commit message from earlier, I also forgot to commit the integration test updates. This is what happens when you try to do things 30 seconds before you leave for the day. To finish up from before: complex events weren't being padded with the reference base as per the VCF spec. They are now.		2011-07-27 22:51:21 -04:00
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net/sf	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
org/broadinstitute/sting	Along with my half-written commit message from earlier, I also forgot to commit the integration test updates. This is what happens when you try to do things 30 seconds before you leave for the day. To finish up from before: complex events weren't being padded with the reference base as per the VCF spec. They are now.	2011-07-27 22:51:21 -04:00