gatk3的最后一个经典版本3.8

Geraldine Van der Auwera 6208742f7c Refactored GATKDocs categories some more ( GSATDG-62 ) ... -- Renamed ValidatePileup to CheckPileup since validation is reserved word -- Renamed AlignmentValidation to CheckAlignment (same as above) -- Refactored category definitions to use constants defined in HelpConstants -- Fixed a couple of minor typos and an example error -- Reorganized the GATKDocs index template to use supercategories -- Refactored integration tests for renamed walkers (my earlier refactoring had screwed them up or not carried over)		2013-02-13 16:49:18 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected/java	Refactored GATKDocs categories some more ( GSATDG-62 )	2013-02-13 16:49:18 -05:00
public	Refactored GATKDocs categories some more ( GSATDG-62 )	2013-02-13 16:49:18 -05:00
settings	Refactored GATKDocs categories some more ( GSATDG-62 )	2013-02-13 16:49:18 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Minor build.xml cleanup post-variant-migration	2013-02-06 11:16:52 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00