chartl 61d5daa65c EXTREME interval processing. Still undergoing testing. ... + GroupIntervals allows user-defined scattering (e.g. take an interval list file, split it into k smaller interval list files by number of lines) + ExpandIntervals expands the intervals, either by widening them, or allowing the definition for nearby intervals (e.g. flanks starting 1bp before and after, ending 10bp after that) + IntersectIntervals takes n interval lists, writes 1 interval list that is the n-way intersection of all of them git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4885 348d0f76-0448-11de-a6fe-93d51630548a		2010-12-20 19:42:50 +00:00
..
old	Restructuring my qscripts	2010-12-11 20:58:45 +00:00
RefineGenotypesAndMerge.q	Commit for Ryan	2010-10-05 19:04:10 +00:00
batchMergePipeline.q	Now that addAll() is in the superclass, no longer need this definition (which, without override, prevents the script from compiling anyway)	2010-12-17 05:36:31 +00:00
expanded_targets.q	EXTREME interval processing. Still undergoing testing.	2010-12-20 19:42:50 +00:00
fullCallingPipelineV2.q	java changes:	2010-12-12 05:10:45 +00:00
omni_qc.q	Bug fix to GenotypeConcordance. AC metrics get instantiated based on number of eval samples; if Comp has more samples, we can see AC indeces outside the bounds of the array.	2010-11-03 19:23:03 +00:00
private_mutations.q	Commit for Khalid -- should be a scala version of vcf2table but for some reason the run method isn't getting called.	2010-12-15 00:44:15 +00:00