ebanks 61d511f601 Small memory performance improvement: remove the mapping from the hash instead of setting the value to null (i.e. remove the key too) ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4256 348d0f76-0448-11de-a6fe-93d51630548a		2010-09-12 05:19:09 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Small memory performance improvement: remove the mapping from the hash instead of setting the value to null (i.e. remove the key too)	2010-09-12 05:19:09 +00:00
test	Damnit. Enabling the Picard code to recalculate all of the relevant SAMRecord attribute tags means that I need to have reference bases over all read bases even after realignment (and there are some big indels in dbsnp). Fortunately, I have my trusty IndexedFastaSequenceFile reader handy! Re-enabling the previously broken performance test.	2010-09-12 05:06:37 +00:00