gatk3的最后一个经典版本3.8

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Phillip Dexheimer 6190d660e0 Edits to work with the latest htsjdk release: * TextCigarCodec.decode() is now static, and the getSingleton() method is gone * MergingSamRecordIterator now wants a Collection<SamReader> rather than Collection<SAMFileReader> in the constructor * SeekableBufferedStream now correctly reads the requested number of bytes, removed workaround in GATKBAMIndex		2015-01-13 21:32:10 -05:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	Edits to work with the latest htsjdk release:	2015-01-13 21:32:10 -05:00
public	Edits to work with the latest htsjdk release:	2015-01-13 21:32:10 -05:00
settings/helpTemplates	Output JSON version of docs for Galaxy	2014-10-09 06:42:25 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00

The Genome Analysis Toolkit