d6e2e89f99
System has the concept of a local and a global MD5 db. The local one is like it operated previously. The global one lives in /humgen/gsa-hpprojects/GATK/data/integrationtests. If the system can find this directory then MD5s will also be read / written to this location. This means that gsabamboo will print differences as appropriate. And all users will in effect have access to a complete history of MD5 file results. A few minor code reshuffles changed VariantRecalibration and VCFHeader test files. |
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| .. | ||
| baq | ||
| bed | ||
| codecs | ||
| collections | ||
| fasta | ||
| genotype | ||
| interval | ||
| pileup | ||
| report | ||
| sam | ||
| text | ||
| threading | ||
| variantcontext | ||
| BaseUtilsUnitTest.java | ||
| GenomeLocParserUnitTest.java | ||
| GenomeLocSortedSetUnitTest.java | ||
| GenomeLocUnitTest.java | ||
| MWUnitTest.java | ||
| MathUtilsUnitTest.java | ||
| PathUtilsUnitTest.java | ||
| ReadUtilsUnitTest.java | ||
| ReservoirDownsamplerUnitTest.java | ||
| SimpleTimerUnitTest.java | ||
| UtilsUnitTest.java | ||