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datasources
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Fixed the add functionality of GenomeLocSortedSet.
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2013-02-28 23:31:00 -05:00 |
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downsampling
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- Changed loadContaminationFile file parser to delimit by tab only. This allows spaces in sampleIDs, which apparently are allowed.
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2013-03-07 13:04:24 -05:00 |
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executive
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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filters
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Added better error message for BAMs with bad read groups.
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2013-02-27 16:02:56 -05:00 |
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iterators
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Refactor LIBS into utils.locusiterator before refactoring
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2013-01-11 15:17:16 -05:00 |
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refdata
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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report
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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samples
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Updating TestNG to the latest version
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2013-02-22 09:40:23 -05:00 |
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traversals
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Fix tests that were consistently or intermittently failing when run in parallel on the farm
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2013-03-06 13:56:54 -05:00 |
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walkers
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Fix runtime public -> protected dependencies in the test suite
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2013-02-26 21:19:12 -05:00 |
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CommandLineGATKUnitTest.java
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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EngineFeaturesIntegrationTest.java
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Increase timeout for a test in the EngineFeaturesIntegrationTest
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2013-03-12 23:53:26 -04:00 |
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GenomeAnalysisEngineUnitTest.java
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Added the functionality to impose a relative ordering on ReadTransformers in the GATK engine.
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2013-03-06 12:38:59 -05:00 |
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MaxRuntimeIntegrationTest.java
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Fix more tests that fail when run in parallel on the farm
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2013-03-12 16:53:30 -04:00 |
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WalkerManagerUnitTest.java
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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