gatk3的最后一个经典版本3.8

aaron 611d834092 a couple of VCF 4 improvements: ... -Validation of INFO and FORMAT fields. -Conversion to the the correct type for info fields (i.e. allele frequency is now stored as a float instead of a string). -Checks for CNV style alternate allele encodings( i.e. <INS:ME:L1>), right now we exception out. Maybe we should just warn the user? -Tests for the multiple-base polymorphism allele case. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3622 348d0f76-0448-11de-a6fe-93d51630548a		2010-06-23 20:21:43 +00:00
R	This script produces tearsheet and data processing report figures and tables when given Squid and Firehose produced data	2010-06-18 21:36:29 +00:00
archive	Retiring multi-sample genotyper	2010-05-20 14:11:11 +00:00
c	Reduce file handle usage.	2010-01-05 18:03:01 +00:00
doc	moved to wiki	2009-07-22 16:35:23 +00:00
java	a couple of VCF 4 improvements:	2010-06-23 20:21:43 +00:00
matlab	Another matlab script -- this time for making power and coverage plots over a specific gene region. Lots of fun file reading, string manipulation, and exploration of the set() function	2009-11-30 20:02:25 +00:00
packages	Update to the latest rev of the picard sharding patch. Includes updates reflecting	2010-06-06 20:33:21 +00:00
perl	Stupid cent_os doesn't allow old style 'sort' conventions. Updating liftover script...	2010-06-17 13:44:03 +00:00
python	Fixed typo	2010-06-15 21:17:14 +00:00
ruby	Adding the ruby directory, and a simple script to restart Bamboo	2009-12-03 22:48:48 +00:00
scala/src	Refactoring for a first version of scatter gather api with basic shell script implementations.	2010-06-22 18:39:20 +00:00
settings	some updates to tribble for the svn commit that will follow	2010-06-23 20:20:07 +00:00
shell	Refactoring for a first version of scatter gather api with basic shell script implementations.	2010-06-22 18:39:20 +00:00
testdata	fixing the tests; Bamboo captured the failure in the logs correctly.	2010-06-22 18:38:03 +00:00
LICENSE	Adding a license to the root directory in case BOSC checks for one. Has the	2010-04-20 16:04:29 +00:00
build.xml	Refactoring for a first version of scatter gather api with basic shell script implementations.	2010-06-22 18:39:20 +00:00
ivy.xml	Refactoring for a first version of scatter gather api with basic shell script implementations.	2010-06-22 18:39:20 +00:00