gatk-3.8

gatk3的最后一个经典版本3.8

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depristo 611ab0bdb3 Uses the new FastaSequenceFile2 for high-performance seeks. Added far superior error checking (and reporting!) messages for incorrect usage of the location string. Prevents users from seeing complex FunctionalJ error message git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@140 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-22 19:56:54 +00:00
core/java/src/org/broadinstitute/sting	Uses the new FastaSequenceFile2 for high-performance seeks.	2009-03-22 19:56:54 +00:00
doc	Describe how GATK finds walkers. Change the example to avoid copying the class file into the walkers directory.	2009-03-19 22:41:12 +00:00
playground	New FastaSequenceFile with support for poor-man's seek and querying the next contig name without loading the whole next contig into memory. Vastly speeds up the performance of jumping to distant parts of the genome with the location operator.	2009-03-22 19:43:56 +00:00
settings	Update picard to work with new samtools.	2009-03-20 21:51:26 +00:00
testdata	Skeleton of new directory structure.	2009-03-11 20:05:05 +00:00
build.xml	Added FourBaseCaller as a jar build target.	2009-03-21 17:59:13 +00:00
ivy.xml	Update picard to work with new samtools.	2009-03-20 21:51:26 +00:00