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Laura Gauthier 43fdd38342 Add error handling to CalculateGenotypePosteriors to catch multiallelic variants with wrong number of ACs 
-- throws UserException; added tests in PosteriorLikelihoodsUtilsUnitTests
Add error handling to CalculateGenotypePosteriors for cases where MLEAC>AN; add tests in PosteriorLikelihoodsUtilsUnitTests
Add unit tests to confirm that CalculateGenotypePosteriors has the ability to switch genotypes for four cases
 		2014-03-05 12:03:18 -05:00
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c At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings. 2012-01-17 14:47:53 -05:00
chainFiles
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doc Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs) 2013-03-12 10:57:14 -04:00
external-example Fixed mvn run for packagetests over external-example. 2014-02-22 01:21:34 +08:00
gatk-framework Add error handling to CalculateGenotypePosteriors to catch multiallelic variants with wrong number of ACs 2014-03-05 12:03:18 -05:00
gatk-package Fixed scope for test-jar depedencies. 2014-02-22 01:21:34 +08:00
gatk-queue-extgen Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script. 2014-02-03 13:50:46 -05:00
gsalib Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution. 2014-02-06 08:25:38 -05:00
java/config Moved files to maven directories. 2014-02-03 13:50:44 -05:00
package-tests Separate failsafe directories for each of the integration test types [#66515572] 2014-02-27 04:43:39 +08:00
perl Fixing the liftover script to not require strict VCF header validation. 2013-11-07 09:02:17 -05:00
queue-framework Added tests for cleaning up scattered .bai files, and using the log directory. 2014-02-26 02:11:28 +08:00
queue-package Fixed scope for test-jar depedencies. 2014-02-22 01:21:34 +08:00
repo Replaced local drmaa and Jama artifacts with versions from maven central. 2014-02-22 01:21:35 +08:00
sting-root Attempting to limit gc during Maven tests, using defaults found in JavaCommandLineFunction 2014-03-01 15:24:45 +08:00
sting-utils Replaced local drmaa and Jama artifacts with versions from maven central. 2014-02-22 01:21:35 +08:00
pom.xml Adding the external example to the build. 2014-02-15 01:26:07 +08:00