Mauricio Carneiro 1b75663178 BQSR Gatherer implementation and integration tests ... * restructured the hash tables into one class (RecalibrationReport) that has all the functionality for the different tables and key managers * optmized empirical qual calculation when merging recalibration reports * centralized the quality score quantization functionalities * unified the creating/loading of all the key manager/hash table structures. * added unit tests for the gatherer (disabled because gatk report needs to be sorted for automated testing) * added integration tests for BQSR and on-the-fly recalibration		2012-03-27 13:50:22 -05:00
..
config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	BQSR Gatherer implementation and integration tests	2012-03-27 13:50:22 -05:00
test	BQSR Gatherer implementation and integration tests	2012-03-27 13:50:22 -05:00