gatk3的最后一个经典版本3.8

Mark DePristo 609ca0baab canRead() now implemented by looking for BAM_MAGIC value BAM\1 in file, and for the ##fileformat=VCFv4 header line in the VCF file. BAM reader now fully operational, and with a unit test. All unit tests work now. Minus function / class documentation the system is pretty stable and usable.		2011-07-07 22:02:45 -04:00
public	Now supports the case where you have multiple AC values in the info field.	2011-07-07 17:21:15 -04:00
settings	Updated the tribble jar -- this should fix most of the integration test	2011-06-29 01:11:03 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Refactored DiffNode/DiffElement/DiffValue class structure. DiffElement is now a pair of Name -> Value, where value is either a DiffValue or its subclass DiffNode. Code cleaned up, more tests added. DiffEngine is now working, with tests. DiffObjectWalker can now take two VCFs and itemize the difference between the two files correctly and concisely.	2011-07-05 16:13:39 -04:00
ivy.xml	A prototype script and library dependencies to extract a BAM list from a	2011-06-22 22:53:45 +00:00