gatk3的最后一个经典版本3.8

Menachem Fromer 5ff24f8cf3 We want the DoC calculations for CNVs to include N bases in the reference just so that the PAR regions in chr Y (set to all Ns) end up with mean coverage of 0/L, where L = target length (and not NaN = 0/0). Including Ns in any other targets is probably OK too, since most (if not all) non-chromosome Y targets will not have any Ns		2012-03-28 16:42:34 -04:00
public	Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2012-03-28 16:00:38 -04:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	Updated license year	2012-03-27 14:32:02 -04:00
build.xml	Bug fix to previous UnifiedGenotyperEngine refactoring, removed debug code	2012-03-25 10:20:21 -04:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00