ebanks 5fab934f4e - moved the reference maker to its own directory ... - added first version of a more complicated reference maker which takes in RODs and creates an alternative reference based on the variants (indels and/or SNPs) git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1409 348d0f76-0448-11de-a6fe-93d51630548a		2009-08-11 18:01:06 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	- moved the reference maker to its own directory	2009-08-11 18:01:06 +00:00
test/org/broadinstitute/sting	fixed two tests affected by my previous commit	2009-08-11 17:57:50 +00:00